A systematic literature review on research data management practices and services | Emerald Insight

Abstract:  Purpose

Research data management (RDM) has been called a “ground-breaking” area for research libraries and it is among the top future trends for academic libraries. Hence, this study aims to systematically review RDM practices and services primarily focusing on the challenges, services and skills along with motivational factors associated with it.

Design/methodology/approach

A systematic literature review method was used focusing on literature produced between 2016–2020 to understand the latest trends. An extensive research strategy was framed and 15,206 results appeared. Finally, 19 studies have fulfilled the criteria to be included in the study following preferred reporting items for systematic reviews and meta-analysis.

Findings

RDM is gradually gaining importance among researchers and academic libraries; however, it is still poorly practiced by researchers and academic libraries. Albeit, it is better observed in developed countries over developing countries, however, there are lots of challenges associated with RDM practices by researchers and services by libraries. These challenges demand certain sets of skills to be developed for better practices and services. An active collaboration is required among stakeholders and university services departments to figure out the challenges and issues.

Research limitations/implications

The implications of policy and practical point-of-view present how research data can be better managed in the future by researchers and library professionals. The expected/desired role of key stockholders in this regard is also highlighted.

Originality/value

RDM is an important and emerging area. Researchers and Library and Information Science professionals are not comprehensively managing research data as it involves complex cooperation among various stakeholders. A combination of measures is required to better manage research data that would ultimately move forward for open access publishing.

Library Coalition agreement with Elsevier results in lower costs, greater access – Odessa American

“All TLCUA members will receive a discount on journal subscriptions–some as high as 30%–while still maintaining significant amounts of access to journals and combined, will realize a savings of over $4.75M annually. Beyond initial cost savings, Elsevier agreed to a maximum annual increase of 2% over the course of the license agreement, with some years as low as 0%, which is significantly lower than industry standard.

TLCUA and Elsevier have agreed to partner on a pilot project to revert ownership of journal articles back to original authors—and not just those at TLCUA-member institutions. Currently, authors transfer copyright of their work in exchange for that work being published. This pilot will provide for rights to go back to authors after a period of time that will be collaboratively determined with Elsevier. A subset of Elsevier journals will be chosen to study the impact of the copyright reversion pilot for authors and its applicability more broadly to STEM (scientific, technical, engineering and medical) publishers, the release said….”

2023 Unconference on Open Scholarship Practices in Education Research

“The 2023 Unconference will be a virtual participation event featuring participant-led sessions analyzing the current state of open scholarship practice seeking solutions to identified problems. Participants will assess barriers to adoption of open scholarship practices unique to the education community and brainstorm strategies for promoting greater awareness….”

Antibiotic discovery in the artificial intelligence era – Lluka – Annals of the New York Academy of Sciences – Wiley Online Library

Abstract:  As the global burden of antibiotic resistance continues to grow, creative approaches to antibiotic discovery are needed to accelerate the development of novel medicines. A rapidly progressing computational revolution—artificial intelligence—offers an optimistic path forward due to its ability to alleviate bottlenecks in the antibiotic discovery pipeline. In this review, we discuss how advancements in artificial intelligence are reinvigorating the adoption of past antibiotic discovery models—namely natural product exploration and small molecule screening. We then explore the application of contemporary machine learning approaches to emerging areas of antibiotic discovery, including antibacterial systems biology, drug combination development, antimicrobial peptide discovery, and mechanism of action prediction. Lastly, we propose a call to action for open access of high-quality screening datasets and interdisciplinary collaboration to accelerate the rate at which machine learning models can be trained and new antibiotic drugs can be developed.

 

Preprints em CSP

From Google’s English:  “CSP [Cad Saúde Pública] is a journal that guarantees public and free access to its entire collection for the reading public, an essential part of the principles of Open Science. In addition, CSP recognizes the importance of preprints in today’s scientific publishing scenario and, since 2020, accepts articles previously deposited in non-commercial preprint repositories (eg: arXiv, bioRxiv, medRxiv, Zenodo and SciELO Preprints), before submission to the journal or during the peer review process.

 

In these two situations, it is necessary for the author to notify the journal’s editorial team and inform the name of the preprints server and the DOI assigned to the article.two?? However, the practice of publishing preprints of an article already approved in CSP on a server is not recommended. In this case, the participation of the scientific community debating with the author will not contribute to the improvement of the article and the duplicate DOI can harm the authors and the journal….

It is emphasized that the deposit of the article in the preprints server is a decision of the author. It is worth noting, however, the implications for the double-blind peer review system adopted by CSP, since it makes it possible to identify authorship.”

The Great Inflation: How COVID-19 affected the Journal Impact Factor of high impact medical journals

Abstract:  The journal impact factor (IF) is the leading method of scholarly assessment in today’s research world, influencing where scholars submit their research and funders distribute their resources. The Coronavirus disease 2019 (COVID-19), one of the most serious health crises, resulted in an unprecedented surge of publications across all areas of knowledge. An important question is whether COVID-19 affected the “gold standard of scholarly assessment”. We took as an example six high impact general medicine journals (Annals, BMJ, Lancet, Nature, NEJM and JAMA) and searched the literature using the Web of Science database for manuscripts published between January 1, 2019 and December 31, 2021. To assess the effect of COVID-19 and non-COVID-19 literature in their scholarly impact, we calculated their annual IFs and percentage changes. Thereafter, we estimated the citation probability of COVID-19 and non-COVID-19 publications along with their publication and citation rates by journal. A significant increase in IF change for COVID-19 manuscripts published from 2019 to 2020 was seen, against non-COVID-19 ones. The likelihood of highly cited publications was significantly increased in COVID-19 manuscripts from 2019 to 2021.The publication and citation rates of COVID-19 publications followed a positive trajectory, as opposed to non-COVID-19. The citation rate for COVID-19 publications peaked 10 months earlier than the publication rate. The rapid surge of COVID-19 publications emphasised the capacity of scientific communities to respond against a global health emergency, yet inflated IFs create ambiguity as benchmark tools for assessing scholarly impact. The immediate implication is a loss in value of and trust on journal IFs as metrics of research and scientific rigour perceived by academia and the society. Loss of confidence towards procedures employed by highly reputable publishers may incentivise authors to exploit the publication process by monopolising their research on COVID-19 and encourage them towards publishing in journals of predatory behaviour.

 

Pandemic and infodemic: the role of academic journals and preprints | SpringerLink

“In contrast, before the outbreak of COVID-19 pandemic, clinical researchers were generally reluctant to adopt widespread sharing of preprints, probably because of concern that the potential harm that could result to patients, if medical treatment is based on findings that have not been vetted by peer reviewers. For example, the BMJ group opened a preprint server (ClinMedNetPrints.org) in 1999, but was closed in 2008, because only around 80 submissions were posted during this period [7]. The BMJ group, together with Cold Spring Harbor Laboratory and Yale University launched a new server, bioR?iv in 2013, and medR?iv in 2019 [7], but they were not actively used.

Outbreak of COVID-19 pandemic triggered clinical researchers to use actively preprint servers, and during the initial few years of the COVID-19 pandemic, more than 35,000 preprints, mainly related to COVID-19, have been posted to medR?iv. This marked increase in the posting of preprints indicates that clinical researchers have found benefits of preprints in the era of COVID-19 pandemic: research outcomes can be disseminated quickly, potentially speeding up research that may lead to the development of vaccines and treatments; quality of the draft can be improved by receiving feedback from a wider group of readers; the authors can claim priority of their discovery; and unlike articles published in subscription-based journals, all the preprints are freely available to anyone….”

 

Home – Data Commons

“Publicly available data from open sources (census.gov, cdc.gov, data.gov, etc.) are vital resources for students and researchers in a variety of disciplines. Unfortunately, processing these datasets is often tedious and cumbersome. Organizations follow distinctive practices for codifying datasets. Combining data from different sources requires mapping common entities (city, county, etc.) and resolving different types of keys/identifiers. This process is time consuming, tedious and done over and over. Our goal with Data Commons is to address this problem.

Data Commons synthesizes a single graph from these different data sources. It links references to the same entities (such as cities, counties, organizations, etc.) across different datasets to nodes on the graph, so that users can access data about a particular entity aggregated from different sources without data cleaning or joining. We hope the data contained within Data Commons will be useful to students, researchers, and enthusiasts across different disciplines….

Data Commons can be accessed by anyone via the tools available on datacommons.org. Students, researchers and developers can use the REST, Python and Google Sheets APIs, all of which are free for educational, academic and journalistic research purposes….”

Next Generation Library Project Makes Progress Toward Shared Open Publishing Infrastructure – SPARC

“The Next Generation Library Publishing (NGLP) project is working to change that by providing libraries with resources to create a robust, values-driven, and community-led system to share knowledge. With support from an Arcadia Fund grant, the NGLP began as a collaboration of Strategies for Open Science (Stratos), the California Digital Library (CDL), and Educopia with three co-investigators: Kristen Ratan, Catherine Mitchell and Katherine Skinner.

The team gathered feedback from the library community, developed open-source software, and has piloted technology solutions that are showing promising results. Their aim is to provide tools that will help librarians become key players as publishers –  complementing their work as repository managers – to offer a sustainable, non-commercial alternative as knowledge brokers….

One pilot included five library publishers interested in testing a turnkey, hosted journal and institutional repository solution. Another, led by California Digital Library (CDL), tested the NGLP ecosystem’s ability to serve a large consortial publisher hosting in-house. And yet another, led by University of North Carolina Press and Longleaf Services, tested a journal and journal portal solution. All participants are eager to continue production services. …”

Realities of Academic Data Sharing (RADS) Initiative: Research Update #2—Activities for Making Research Data Publicly Accessible – Association of Research Libraries

“Public access to research data is critical to advancing science and solving real world problems. The Realities of Academic Data Sharing (RADS) Initiative project team has spent considerable time this year developing surveys designed for campus administrators and funded researchers, inquiring into public-access research data management and sharing (DMS) activities and their costs. Public-access DMS activities are often distributed across institutional departments and units and, as such, the expenditures to support these activities are rarely captured holistically within one institution and may not even be captured at the unit or department level. The goal of surveying campus administrators and funded researchers is twofold: to determine where, within the institution, these activities are occurring, and to understand the costs to the institution to support them. Defining public-access DMS activities further provides a common framework for gathering expenses for the staffing, services, and infrastructure of these activities, which then provides a more comprehensive view of the overall cost of making research data publicly accessible.

Although the RADS studies focus on data management practices over the last decade, the project team recognizes that many of these activities may be helpful for those in the higher education community currently defining institutional processes for supporting public access to research data. Identifying necessary services, infrastructure, and staffing, and ways in which to categorize expenses and budgeting for open access to research data, is timely due to the 2023 NIH Data Management and Sharing Policy and the revised federal agency policies that will result from the 2022 OSTP Nelson memo.

The RADS project team and the Association of Research Libraries (ARL) have released a report, Public Access Data Management and Sharing Activities for Academic Administration and Researchers, that defines the data management and sharing activities used in our research. We hope that the research community will provide feedback around these activities, as this report presents version 1 of the RADS public access DMS activities. Additional versions will be released in response to community feedback and best practices as more institutions and agencies implement DMS policies in the coming year….”

ARL Statement on Texas Library Coalition for United Action Agreement with Elsevier – Association of Research Libraries

“Today more than 40 public and private academic institutions in Texas—members of the Texas Library Coalition for United Action (TLCUA)—announced the conclusion of a successful negotiation with Elsevier. TLCUA member libraries secured cost savings on journal subscription access, along with a set of favorable license terms and a novel pilot experiment in restoration of author copyrights that stands to benefit all authors, not just those associated with TLCUA member institutions….”

The Collection Management System Collection · BLOG Progress Process

“It seems like every couple of months, I get asked for advice on picking a Collection Management System (or maybe referred to as a digital repository, or something else) for use in an archive, special collection library, museum, or another small “GLAMorous” institution. The acronym is CMS, which is not to be confused with Content Management System (which is for your blog). This can be for collection management, digital asset management, collection description, digital preservation, public access and request support, or combinations of all of the above. And these things have to fit into an existing workflow/system, or maybe replace an old system and require a data migration component. And on top of that, there are so many options out there! This can be overwhelming!

What factors do you use in making a decision? I tried to put together some crucial components to consider, while keeping it as simple as possible (if 19 columns can be considered simple). I also want to be able to answer questions with a strong yes/no, to avoid getting bogged down in “well, kinda…” For example, I had a “Price” category and a “Handles complex media?” category but I took them away because it was too subjective of an issue to be able to give an easy answer. A lot of these are still going to be “well, kinda” and in that case, we should make a generalization. (Ah, this is where the “simple” part comes in!)

In the end, though, it is really going to depend on the unique needs of your institution, so the answer is always going to be “well, kinda?” But I hope this spreadsheet can be used as a starting point for those preparing to make a decision, or those who need to jog their memory with “Can this thing do that?”…”

The Royal Society of Chemistry joins Jisc’s Publications Router service – Research

“The Royal Society of Chemistry (RSC), a global publisher in chemical sciences and related fields, is now supplying full-text journal articles to Jisc’s Publications Router, which automatically delivers them into the open repositories of the UK institutions to which the authors are affiliated….”

Role of DOAJ in Promoting Open Access in India

Abstract:  The Open Access (OA) movement supports online access to scholarly publications, eliminates financial and legal restrictions, and supports the dissemination of knowledge. Open access is not a new concept for Indian researchers. Still, there is some gap in the open access movement in India. Open access journals are growing in India, but many are questionable publications, and researchers are sending their papers to such journals. Many times, researchers are not able to identify the correct journal for their paper publication. The major goal of this study is to evaluate the role of DOAJ in the corpus of knowledge made by scholarly publications published between 2003 and 2022. Worldwide recognized database DOAJ (Directory of Open Access Journals) was analyzed for this research study. Open access publishing demonstrates how the world of knowledge is  dynamic. India has significantly contributed to the growth of knowledge with its 326 open access journals. DOAJ ambassador and other OA advocates are also trying for promoting open access in India.

Ouvrir la Science – Open Science library

“The guide explains the rights retention strategy, its benefits for the researcher and the operational details of its application. It also provides an FAQ that addresses the main questions about choosing licenses, the options available at the various stages of publication, and how to manage relationships with publishers….”