CellMissy is a cross-platform data management system for cell migration/invasion data that simplifies and fully automates data management, storage and analysis, from experimental set-up to data visualization and exploration. CellMissy is a client-server application with a graphical user interface on the client, and a relational database in the back-end to store the data. The client application is composed of three modules that cover the different functions of CellMissy: the Experiment Manager, the Data Loader and the Data Analyzer. On top of these modules, CellMissy provides tools for import/export of full experiments and templates. CellMissy is described in CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays. (P. Masuzzo, N. Hulstaert, L. Huyck, C. Ampe, M. Van Troys and L. Martens, PMID: 23918247)
Find CellMissy: Cell Migration Invasion Storage System at: https://github.com/compomics/cellmissy
Author Archives: Dan Gezelter
OpenPIV – open source particle image velocimetry
Open source particle image velocimetry software package that provides the all-in-one solution for analysis of PIV images, post-processing of PIV data and insightful analysis using Proper Orthogonal Decomposition, pressure from PIV and background oriented Schlieren toolboxes.
Find OpenPIV – open source particle image velocimetry at: http://www.openpiv.net
ELN – Electronic Lab Notebook
ELN is an Electronic Lab Notebook for scientists of all stripes ELN is great for: taking notes during experiments since it automatically saves your input every 10 seconds so that your notes will never be lost; keeping track of data analysis results since screen shots and other graphics can be added to a notebook page by drag-and-drop or copy-and-paste; recording your lit searches, since it will automatically download papers from PubMed and archive them with your notebook; recording your thought processes, since it will never get in the way of your typing with arbitrary constraints of input formatting.
Find ELN – Electronic Lab Notebook at: https://github.com/wagenadl/eln
FlexibleParser
Powerful .NET library allowing to easily deal with a wide variety of situations involving units of measurement.
Find FlexibleParser at: https://github.com/varocarbas/FlexibleParser
IQmol
IQmol is a easy to use molecular editor and visualization package with the ability to connect to remote servers to run ab initio calculations.
Find IQmol at: http://iqmol.org
OpenPIV – open source particle image velocimetry
Open source particle image velocimetry software package that provides the all-in-one solution for analysis of PIV images, post-processing of PIV data and insightful analysis using Proper Orthogonal Decomposition, pressure from PIV and background oriented Schlieren toolboxes.
Find OpenPIV – open source particle image velocimetry at: http://www.openpiv.net
ELN – Electronic Lab Notebook
ELN is an Electronic Lab Notebook for scientists of all stripes ELN is great for: taking notes during experiments since it automatically saves your input every 10 seconds so that your notes will never be lost; keeping track of data analysis results since screen shots and other graphics can be added to a notebook page by drag-and-drop or copy-and-paste; recording your lit searches, since it will automatically download papers from PubMed and archive them with your notebook; recording your thought processes, since it will never get in the way of your typing with arbitrary constraints of input formatting.
Find ELN – Electronic Lab Notebook at: https://github.com/wagenadl/eln
CellMissy: Cell Migration Invasion Storage System
CellMissy is a cross-platform data management system for cell migration/invasion data that simplifies and fully automates data management, storage and analysis, from experimental set-up to data visualization and exploration. CellMissy is a client-server application with a graphical user interface on the client, and a relational database in the back-end to store the data. The client application is composed of three modules that cover the different functions of CellMissy: the Experiment Manager, the Data Loader and the Data Analyzer. On top of these modules, CellMissy provides tools for import/export of full experiments and templates. CellMissy is described in CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays. (P. Masuzzo, N. Hulstaert, L. Huyck, C. Ampe, M. Van Troys and L. Martens, PMID: 23918247)
Find CellMissy: Cell Migration Invasion Storage System at: https://github.com/compomics/cellmissy
FlexibleParser
Powerful .NET library allowing to easily deal with a wide variety of situations involving units of measurement.
Find FlexibleParser at: https://github.com/varocarbas/FlexibleParser
IQmol
IQmol is a easy to use molecular editor and visualization package with the ability to connect to remote servers to run ab initio calculations.
Find IQmol at: http://iqmol.org
Tabula
If you’ve ever tried to do anything with data provided to you in PDFs, you know how painful it is — there’s no easy way to copy-and-paste rows of data out of PDF files. Today we discovered a great open source tool called Tabula that allows you to extract that data into a CSV spreadsheet using a simple, easy-to-use interface. Tabula works on Mac, Windows and Linux.
- Tabula’s main page: http://tabula.technology/
- The source code for tabula lives at: https://github.com/tabulapdf/tabula
FlexibleParser
Powerful .NET library allowing to easily deal with a wide variety of situations involving units of measurement.
Find FlexibleParser at: https://github.com/varocarbas/FlexibleParser
CellMissy: Cell Migration Invasion Storage System
CellMissy is a cross-platform data management system for cell migration/invasion data that simplifies and fully automates data management, storage and analysis, from experimental set-up to data visualization and exploration. CellMissy is a client-server application with a graphical user interface on the client, and a relational database in the back-end to store the data. The client application is composed of three modules that cover the different functions of CellMissy: the Experiment Manager, the Data Loader and the Data Analyzer. On top of these modules, CellMissy provides tools for import/export of full experiments and templates. CellMissy is described in CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays. (P. Masuzzo, N. Hulstaert, L. Huyck, C. Ampe, M. Van Troys and L. Martens, PMID: 23918247)
Find CellMissy: Cell Migration Invasion Storage System at: https://github.com/compomics/cellmissy
IQmol
IQmol is a easy to use molecular editor and visualization package with the ability to connect to remote servers to run ab initio calculations.
Find IQmol at: http://iqmol.org
OpenPIV – open source particle image velocimetry
Open source particle image velocimetry software package that provides the all-in-one solution for analysis of PIV images, post-processing of PIV data and insightful analysis using Proper Orthogonal Decomposition, pressure from PIV and background oriented Schlieren toolboxes.
Find OpenPIV – open source particle image velocimetry at: http://www.openpiv.net