“Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. Our goal is to aid epidemiological understanding and improve outbreak response. If you have any questions, or simply want to say hi, please give us a shout at hello@nextstrain.org….”
Category Archives: oa.vizualizations
Nextstrain
“Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. Our goal is to aid epidemiological understanding and improve outbreak response. If you have any questions, or simply want to say hi, please give us a shout at hello@nextstrain.org….”
Food Modelling Journal: New open-access venue provides a platform for food scientists | EurekAlert! Science News
“The open-access Food Modelling Journal (FMJ) was launched by the AGINFRA+ community and Pensoft with the aim to encourage food science specialists, agronomists and computer scientists to come together and work on assuring and improving food supply, quality and safety in our globalised and rapidly changing world….
FSK-ML is an open information exchange format that is based on harmonised terms, metadata and controlled vocabulary to harmonise annotations of risk assessment models and that was significantly improved and extended during the AGINFRA+ project.”
Free dataset archive helps researchers quickly find a needle in a haystack
“Ahmed Eldawy, an assistant professor of computer science in the Marlan and Rosemary Bourns College of Engineering, and his group spent the last three years combing the internet for public spatio-temporal datasets, studying their attributes, and summarizing the results for each set on interactive maps that show the user exactly what they’re getting.
“People who work on data science need datasets but can spend a lot of time finding them,” Eldawy said. “I wanted to build an archive they can find easily.”
Called the UCR Spatio-temporal Active Repository, or UCR STAR, the archive is made available as a service to the research community to provide easy access to large spatio-temporal datasets through an interactive exploratory interface. Users can search and filter those datasets as if shopping for their research, except that everything is free….”
The death of the literature review and the rise of the dynamic knowledge map | Impact of Social Sciences
“Literature reviews are a core part of academic research that are loathed by some and loved by others. The LSE Impact Blog recently presented two proposals on how to deal with the issues raised by literature reviews: Richard P. Phelps argues, due to their numerous flaws, we should simply get rid of them as a requirement in scholarly articles. In contrast, Arnaud Vaganay proposes, despite their flaws, we can save them by means of standardization that would make them more robust. Here, I put forward an alternative that strikes a balance between the two: Let’s build databases that help systemize academic research. There are examples of such databases in evidence-based health-care, why not replicate those examples more widely?…”