Launch of OKFN Open Science at the Panton Arms

A wonderful launch of Cambridge Open Science / research at the Panton last night. 14 people came which is a wonderful number – enough to get a sense of critical mass. Lovely warm fire, comfy sofas, British beer, projector, screen, internet – what more could we want?

This was driven by Keren Limor who put great energy into the event. Mailing, tweeting, distributing flyers. And she had a great introductory program. Something like:

  • Mixer game
  • Keren presentation on the issues of Open Access and open research (e.g slides of Mat Todd’s work on Open Drug Discovery).
  • PMR talking about the history of OKFN – what I thought of Rufus Pollock in 2004 and why I joined the OKFN then.
  • Excellent video from Jonathan Eisen + Nikc Shockey + PHDComics (http://www.youtube.com/watch?v=L5rVH1KGBCY) on Open Access. 5-minutes of must-watch
  • Discussion
  • Video of Jack Andraka getting Wired award. http://www.wired.co.uk/news/archive/2013-10/17/jack-andraka-wired-2013 . This is sensational.
  • Discussion about what we might do next. There’s a great Idea come up… I’ll tweet when more details

Playing the videos was a stroke of genius, Keren. It’s like being at the movies with friends when you have a sense of community, even if you’ve seen them before (which most hadn’t).

A real feeling of community and going forward. The next meeting’s in a month’s time, in the Panton (Keren, can you comment the date/time?) It’s by Fiona Nielsen who’s developed a really great idea (http://dnadigest.org/news/ ) DNA Digest.

Fiona was one of the four of us who planned the group. Everyone can understand What Fiona will talk about, so please all come. (Cambridge is an easy ride from London, as well).

UPDATE from Keren:

Hi,

Thank you Peter!
Here is the link to the event next month: http://www.eventbrite.co.uk/e/would-you-share-your-genome-sequence-tickets-9293969513

what are we going to talk about?
The genomic era is at our doorstep together with a lot of promises to personalized medicine – But what exactly is a genome? Do I have to share it? Do I have to share it all? With whom should I share it? What ethical issues might arise? What are my rights concerning my genome?

For more updates/links/discussion join our facebook group Open Research Cambridge
All the best
Keren

Fabulous TabulaPDF liberates tables in PDFs; we are collaborators

 

If you found someone writing software which di some of the same sort of things that your software did would you be pleased or upset? If you’re an academic in the modern world you might wellb be upset. “Bugger, we’ve been scooped!” “we’ll have to replicate their functionality”, etc. Because academic success depends on being the first and beating down competition. I have seen so many cases where programs have been rewritten solely for career advancement.

So you might think that when I heard about Tabula 6 months ago I would have been upset. Tabula uses PDFBox (as does our AMI) to turn PDFs into something useful for machines. But I was delighted. Because turning PDFs into semantic form is one of the most soul-destroying activities on earth. There’s no map, a new form of PDF can knowck you back, people don’t understand why we spend this time hacking. It’s lonely.

So first and foremost we welcome Tabula as friends. So let’s see them:

It was then wonderful to meet Mike and Manuel at #MozFest. Mike and Manuel are not concerned about their journal impact factor. They want to make the world a better place.

By hacking PDFs?

Yes! Today’s journalist – e.g. @ProPublica – uses data to find and justify stories. Stories are contained in expense slips, company reports, government spends, etc. The UK MP expenses scandals used crowd-sourcing to analyse zillions of MP’s expense receipts. NHS waste in prescribing non-generic drugs has been highlighted by hacking data. My “crusade” – to liberate factual science from journals – is similar. Most science is destroyed into PDF.

But it can be liberated. So next Wednesday in Oxford (sold out!). I’ll be demonstrating Tabula to get data out of scientific PDFs. It’s immediately understandable and easy to use.

And we face the challenges together. The really horrible aspects of:

  • Optical character recognition (words and numbers in diagrams are often bitmaps)
  • Recognising table formats – many tables are simply layout for humans
  • Restructuring lists
  • Analysing graphs

Etc.

So Mike and Manuel and I spent an hour swapping our experiences, making friends. We’re looking at each others’ codes. We’ll try to avoid duplication.

And most importantly, our community has now grown. Growing from 1 to 2 increasing the impact by a factor of 4. It makes our individual efforts more believable. It helps new people join.

I’m going to have to get a better tweetpic…

Biking the Distance… In 30 Minutes or Less: The Impact of Cost and Location on Urban Bike Share Systems

Citi Bike

Those of us who commute to the PLOS San Francisco office have noticed the emergence of bike share stations cropping up along the San Francisco Bay and on the city’s main drag. And we’re not alone here in San Francisco: the picture above is from the New York City Department of Transportation’s bike share. Around the world, bike share systems, which aim to make bicycles available on a short-term basis to anyone, have experienced massive growth as cities work to decrease gas emissions and encourage people to stay active. However, not everyone is ready to forgo the convenience of four wheels for two just yet. To understand why more people haven’t made the switch from cars to bike share systems, the author of a recently published PLOS ONE paper delved into possible factors affecting our willingness to don a helmet and cycle the distance.

Using publically available data from Washington DC and Boston, Dr. Jurdak, an Australian researcher, conducted a series of statistical analyses designed to examine the impact of bike share system pricing and neighborhood layout on potential bikers. It turns out cost is a major factor for commuters and tourists alike, but distance is not. Although analyses showed a bias towards shorter trips with a tendency towards a peak of 6 minutes—averaging 13 minutes per trip—a sharp drop off occurred in the likelihood of trips right around 30 minutes.

Why the decline at around 30 minutes? In both Boston and Washington DC, trips under 30 minutes incurred no additional cost in the bike share pricing system. Registered users of the bike share, typically commuters, must pay an initial registration fee but have a grace period for all trips completed in less than 30 minutes. Trips extending beyond 30 minutes, however, incur additional fees. In other words, public bicyclers are looking to maximize the distance biked and time spent without incurring any additional cost. Researchers have labeled this as ‘cost sensitivity.’

Statistical analyses also demonstrated the same cost sensitivity in casual users, or those who do not have a monthly or annual membership, and who likely use the bike share system for tourism. However, instead of noting a decline in the likelihood of trips around 30 minutes, Dr. Jurdak found a decline for casual users at around 60 minutes (another price point).

On the other hand, despite sensitivity to cost, bikers appeared less dissuaded from bike trips based on neighborhood layout. Although stations in Boston were on average much closer to other nearby stations than in Washington DC, in general, the trip distribution for both cities was remarkably similar. Perhaps not surprisingly, the most popular routes taken in both Boston and Washington DC were relatively flat.

To encourage more people to cut the car usage and grab a rental bike, Dr. Jurdak recommends that cities consider incentivizing their constituents with what they care about: cost. Modified prices for bike rental during peak hours may decrease car traffic on congested roads; an extension of grace periods for biking difficult topology, like up a steep San Francisco hill, might encourage us to bike even though the clock is ticking to 30 minutes and an incurred rise in price. As cities look to evolve public transportation systems and increase responsible urban mobility, and as city dwellers look for cost-effective ways to get around, bike share programs continue to offer healthy solutions for all, even at 30 minutes or less.

For more on the effects bike share systems are having around the world, check out another recent PLOS ONE paper and the researchers’ blog post on bike webs, visualizations of bike share schemes.

Citations:

Jurdak R (2013) The Impact of Cost and Network Topology on Urban Mobility: A Study of Public Bicycle Usage in 2 U.S. Cities. PLoS ONE 8(11): e79396. doi:10.1371/journal.pone.0079396

Image 1: Citi Bike Launch by New York City Department of Transportation

Finch II: “Our Mind’s Made Up: Don’t Confuse Us With Facts”

Finch II: Accessibility, Sustainability, Excellence: A Review of Progress in Implementing the Recommendations of the Finch Report (October 2013)


Our review is based on a rigorous analysis of evidence from a wide range of sources.”

Hardly. The Finch II review is in fact a very selective re-hash of opinions and opinion-surveys, with nothing faintly resembling the objective evidence called for by the BIS Select Committee.

This exceedingly long, rambling, incoherent new Finch report has very little that is new or substantive; it is mostly vague, self-congratulatory sloganeering. But its thrust is clear: Despite all the objections and counter-evidence to Finch I, and despite the very trenchant and specific critique and recommendations of the BIS Select Committee, Finch II is simply digging in its heels and sticking to what it said in Finch I.

This is clearly the result of remarkably successful lobbying by the UK journal publishing industry (aided and abetted by a small fervent minority of OA advocates who consider free online access insufficient, and insist on paying extra for a CC-BY license that allows re-use, text-mining, re-mixing and re-publication) — plus a good deal of woolly-mindedness (and perhaps some pig-headedness too) in the Finch Committee and its advisors (e.g., the Wellcome Trust).

The most important amendment grudgingly admitted by Finch II is that UK researchers are now free to choose between providing OA via the Green route (of publishing articles in any journal at all, by making the article OA in a repository after any allowable publisher embargo has expired) or via the Gold route (by paying the publisher [pure Gold or hybrid] to make the article OA immediately [with a CC-BY license]).

I will not rehearse again the many reasons why paying for Gold OA is a waste of UK public funds, double-paying arbitrarily inflated “Fool’s Gold” fees to publishers for the UK’s outgoing 6% of worldwide research, over and above paying subscription fees to publishers for all incoming research. The fact is that Finch has now conceded that researchers are free to choose whether or not to pay for Gold, so UK researchers need not waste money on Fool’s Gold unless they wish to. Author choice is restored.

Moreover, Green OA embargo length limits will not be enforced for at least two years (Finch/RCUK are instead focussing all their attention on montoring how the Gold funds are being spent).

And Finch II also seems to have grudgingly conceded that the parallel HEFCE addendum — requiring that in order to be eligible for REF2020, all articles must be deposited in the author’s institutional repository immediately upon publlication (not after an embargo, nor just before REF2020) — is likely to be adopted.

This concession should not have been grudging, because the HEFCE/REF addendum in fact provides the crucial missing component that will make the Finch/RCUK mandate succeed, despite Finch’s preference for Fool’s Gold: It provides the all-important mechanism for monitoring and ensuring timely compliance, by recruiting institutions (ever ready to do anything they possibly can to increase their chances of success in REF) to ensure that deposit is immediate, even if OA is embargoed. (During any embargo the institutonal repositories also have the automated copy-request Button, which enables users to request and authors to provide individual copies for research purposes with just one click each.)

Finch II nevertheless continues to crow about the Finch Policy serving as a beacon for the rest of the world:

It is clear also that our 2012 Report and the subsequent policy developments have proved a catalyst for activity not only in the UK, but internationally.”

In point of fact, apart from the UK, the only other country with a Finch-like preference for Gold is the Netherlands, as has just been announced, almost simultaneously with the release of Finch II. It is no coincidence, of course, that the UK and the Netherlands are the hosts of the world’s largest journal fleet publishers, who have been feverishly lobbying worldwide against mandating Green and for instead funding Gold. The lobbying has had no success anywhere else on the planet, which now has over 80 funder OA mandates and over 200 institutional OA mandates, all of which are Green, except for the UK. (The Netherlands has not mandated OA at all, but threatens to emulate the Finch/RCUK preferential-Gold mandate in 2 years if there is not enough voluntary response.)

So, no news from Finch II, but promising prospects for a HEFCE/REF immediate-deposit requirement that will make the Finch/RCUK Green option succeed.

There are some telling signs, however, of just how fully Finch is in the thrall of the publisher lobby: Open Access is about access to research, yet Finch keeps referring to a “mixed economy” and a “transition,” as if OA were about publishers’ business models, hence about publishing economics, rather than about research access and impact, and as if the goal were Gold OA, rather than OA itself:

We hold to the view that a transition via a mixed economy to Gold OA, where publication costs are met mainly by the payment of [Gold OA fees], is the most effective way of balancing our [sic] objectives of increased access, sustainability and excellence.”

This is also a good point to look more closely at “our” “sustainability” objective: What is it that “we” (who is “we”?) must be be careful to sustain, in the transition to OA: peer-reviewed research? or publishers’ current revenue streams?

And who is to determine the terms and timetable for the transition to OA? The research community? or whatever (and however long) it takes to sustain publishers’ current revenue streams?

Finch seems to have accepted wholesale that publishers are justified in embargoing Green OA in order to sustain their current subscription revenues — and that the UK (double-) paying publishers’ asking-price for Gold OA (as determined by whatever it takes to sustain their current revenue levels) is the fastest and fairest way to make a transition to 100% OA. But what is in reality being sustained here is publishers’ current revenue levels, not peer-reviewed research itself. And publisher embargoes on Green OA are being used to hold back the “transition” timetable for as long as it takes till publishers’ terms are met:

…a transition to open access (OA) over an extended period that would be characterised by a mixed economy“.

To illustrate how fully Finch has identified itself with publishers’ interests and their attempts to hold OA hostage to publishers embargoes and agenda:

We cannot agree? with those who urge policies based solely on Green OA with short or zero embargoes, a position which derives from an exclusive preference for Green OA, rather than a mixed economy. There is a balance to be struck between embargo lengths that provide speedy access on the one hand, and sustainability for subscription-based journals and the business models that underpin them on the other.”

Finch II has internalized without reflection — as if it were a law of nature, rather than merely a publisher-imposed, self-fulfilling prophecy — the canard that Gold OA means immediate OA and Green OA means delayed OA (delayed because publishers embargo it!): The two options are accordingly defined by Finch II as:

immediate free access to publications with the costs met by [Gold OA fees], often referred to as Gold OA?
or free access via repositories after appropriate embargo periods, often referred to as Green OA
.”

In point of fact, over 60% of subscription journals do not embargo Green OA (though Finch certainly seems to be doing its level best to give them the incentive to do so!).

Finch II has also re-affirmed its support for negotiating a Really Big Deal — an extended national license scheme to “sustain” subscription access during the “mixed economy” transition. Translation: Publishers are to be granted their fondest wish of being paid a still bigger UK national license fee for all incoming subscription content, over and above the Finch funds to be paid them for (Fool’s) Gold OA. The UK here will be collaborating in the fulfillment of publishers’ fantasy scenario (see Appendix)…

Finch II also proposes to

monitor the impact of OA policies on learned societies… [because they] start from different positions in engaging with the transition to OA.”

The only relevant question is whether Learned Society publishers are any more justified than commercial publishers in embargoing access to Learned Research in order to “sustain” their current revenue streams. Apart from that, post-Green Fair-Gold publishing will be as open to Learned Society publishers as to commercial publishers, if and when globally mandated Green makes subscriptions unsustainable. In place of whatever Learned Society publishing revenues were supporting “good works” such as meetings and scholarships, these good works can go on to fund themselves (via membership dues and registration fees) instead of being subsidized by lost Learned Research impact.

Finch II closes with:

Our key recommendation is? to develop an interoperable system of repositories and an infrastructure that supports both Gold and Green OA.”

We can all applaud that, thanks to HEFCE/REF. The requisite infrastructure will be the interoperable system of Green OA repositories, with immediate-deposit mandated for all refereed research output, Gold and Green, with or without embargoes, and with or without CC-BY.



Appendix:

Publishers’ Fantasy Scenario

(1) Do whatever it takes to sustain or increase your current revenue streams.

(2) Your current revenue streams come mainly from subscriptions.

(3) Claim far and wide that everything has to be done to sustain publishers’ subscription revenue, otherwise publishing will be destroyed, and with it so will peer review, and research itself.

(4) With (3) as your justification, embargo Green OA self-archiving for as long as possible, and fight against Green OA self-archiving mandates — or make sure allowable embargoes are as long as possible.

(5) Profess a fervent commitment to a transition to full 100% immediate OA — but only Gold OA, and only on your terms, and on your timetable, in such a way as to ensure that you sustain or increase your current revenue streams.

(6) Offer hybrid Gold OA and promise not to “double-dip.” That will ensure that your subscription revenues segue seamlessly into Gold OA revenues while maintaining their current levels.

(7) To hasten the transition, offer even Bigger Big Deals to cover subscriptions at the national level (as you had always dreamt of doing) until all payment is safely converted to (Gold) OA.

(8) Encourage centralized, collective payment of Gold OA fees too, in even Bigger Deals, so Gold OA can continue to be treated as annual institutional — preferably national — payments rather than as piecewise payments per individual article.

(9) Lobby governments to mandate, subsidize and prefer Gold OA (preferably hybrid) rather than mandating Green OA

(10) Make sure Green OA is perceived as delayed OA (because of your embargoes!), so that only Gold OA can be immediate.

(11) Mobilize the minority OA advocates who are in a terrible hurry for re-use rights (CC-BY, text-mining, republication) at all costs, to get them to support you in your promotion of Gold OA and your demotion and embargoing of Green OA.

(12) Cross your fingers and hope that the research community will be gullible enough to buy it all.

There is, however, a compeletely effective prophylactic against this publisher fantasy (but it has to be adopted by the research community, because British and Dutch Ministers are apparently too susceptible to the siren call of the publishing lobby):

(a) Research funders and institutions worldwide all adopt an immediate-deposit mandate, requiring, as a condition of funding, employment and evaluation, that all researchers deposit their final, peer-reviewed drafts in their institutional repositories immediately upon acceptance for publication, regardless of whether they are published in a subscription journal or a Gold OA journal — and regardless of whether access to the deposit is made Green OA immediately or only after a publisher embargo.

(b) Do not mandate or designate any extra money to pay for Gold OA: let that come from the subscription cancellation savings — if and when Green OA actually releases institutions to cancel subscriptions.

(c) To tide over research access needs during any embargo, make sure to implement the institutional repository’s automated copy-request Button so that any user can request — and any author can provide — a single copy for research purposes with just one click each.

OA Thunderclap: Students are rightly angry with all of us

In about 15 hours from now there will be a thunderclap: https://www.thunderclap.it/en/projects/5675-open-access-button-launch

Joe and David – two medical students are ANGRY.

They’re angry that paywalls to the medical literature still exist. That they can’t read the medical literature that they want. That Jack Andraka, still at school, has to pay PUBLISHERS for “permission to read papers which can save lives.

Joe, David, Jack are the future.

And they are angry about the present. The mess that our generation has bequeathed to them. “Green” and “Gold”, mandates that non-one honours and believes in, repositories that are unfilled and no-one uses. Ten years of failure to implement the BOAI principles of access for everyone.

They want to sweep all this away.

So Joe and David have created a Thunderclap. They’ve created an Open Access Button which tells the world every time someone fails to get past a paywall.

Because (as I said):

“Closed access means people die”.

And they understand the modern world. They are using modern methods to tell people that they are unhappy. A LOT of people. They’ve asked us to support them by donating our Twitter followers to the cause. I’ve done this, with 2000 followers. So have people with many more followers (such as Creative Commons – Yeah!)

They want to get 800,000 – they might even beat that.

When things get unbearable we have to protest. I’ve protested against Nuclear weapons. I’ve been to Greenham Common. And Molesworth. I’ve often stood in Marble Arch protesting until UK removed cruise nuclear missiles. I was among 2 million who told Tony Blair not to invade Iraq. (He didn’t listen to me or anyone else).

I’ve demonstrated electronically against software patent in Brussels.

And the OA Thunderclap is telling the world that we’ve had enough. We’re sick of the prevarication.

Join Joe and David. Donate your Twitter followers. Support them to fight for a new world of Openness. Because what they have is the support of the citizens.

(Here’s some of their original post):

If someone hits a paywall in the forest, does it make a sound?

Every time you hit a paywall is an isolated moment of frustration, that is unlikely to shake the ivory tower of academic publishing. By putting these moments together using the Open Access Button, we will capture your individual moments of injustice and frustration and display them, on full view to the world. Only by making this problem impossible to ignore can we change the system.

This project was started by two students, good friends frustrated by the current system and driven to change the publishing system we will have to work with. The project was made possible by the invaluable support of developers, advocates and the open access community at large.

Our team has worked extremely hard in the past few months to develop a prototype which we’re finally ready to show to the world. At launch, the button will be able track and map every time a user hits a paywall, help them share their struggle and finally help them get access to the paper for free. Advocates can use the stories and data the button collects to push for change. Our data and code will all be available for others to use, improve on and do things we couldn’t have dreamed of.

Everyone is affected by this problem, patients, students, doctors and academics. We need your help to make this problem too obvious to ignore. Please help us. Share this thunderclap, and download the button November 18th

Find out more : http://bit.ly/1bEH7XT

 

Open Science Research at the Panton Arms Monday 2013-11-18: All welcome

We’re meeting tomorrow at the Panton Arms Cambridge for the first public Open Science/Research OKFN meetup, organised by Keren Limor. (Four of us met at Keren’s house a month ago to plan it). http://www.eventbrite.co.uk/e/cambridge-open-research-tickets-8650372497 The Panton Arms is the second most famous science pub in Cambridge – or am I being too modest?

It’s open to EVERYONE. It’s easy to get to from London (50 mins half-hourly trains and 10mins walk).

Keren’s asked me to introduce it. We have a tradition of Panton Discussions, captured on video, so I’ll bring my video camera along and give a short (promise! Limited by battery) rambling account of the history of OKFN and science in Cambridge. We’ll take a trip to the holy shrine of 37 Panton Street and kiss the doorstep. There’s a nice warm fire

I’ll bring a slide projector and we can (I think) connect to the net so there’s a chance for people to talk about what they are excited about.

The whole idea is to build a community of people in Cambridge interested in Openness and Science. You don’t have to be a scientist! I shall be there from ca 1800 and we expect to sort-of start around 1830. The Panton sells

  • Beer
  • Soft-drinks
  • Acceptable food
  • Tomato ketchup and mayonnaise (yum!)
  • Chips

This is what the M-R group survived on for 12 years and they are all still alive.

 

The Journal Publisher Lobby in the UK & Netherlands: Part I

The UK and the Netherlands — not coincidentally, the home bases of Big Publishing for refereed research — have issued coordinated statements in support of what cannot be described other than as a publishers’ nocturnal fantasy, in the face of the unstoppable worldwide clamour for Open Access.

Here are the components of the publishers’ nocturnal fantasy:

(1) Do whatever it takes to sustain or increase your current revenue streams.

(2) Your current revenue streams come mainly from subscriptions.

(3) Claim far and wide that everything has to be done to sustain publishers’ subscription revenue, otherwise publishing will be destroyed, and with it so will peer review, and research itself.

(4) With (3) as your justification, embargo Green OA self-archiving for as long as possible, and fight against Green OA self-archiving mandates — or make sure allowable embargoes are as long as possible.

(5) Profess a fervent commitment to a transition to full 100% immediate OA — but Gold OA on your terms, and on your timetable, in such a way as to ensure that you sustain or increase your current revenue streams.

(6) Offer hybrid Gold OA and promise not to “double-dip.” That will ensure that your subscription revenues segue seamlessly into Gold OA revenues while maintaining their current levels.

(7) To hasten the transition, offer even Bigger Big Deals to cover subscriptions at the national level (as you had always dreamt of doing) until all payment is safely converted to (Gold) OA.

(8) Encourage centralized, collective payment of Gold OA fees too, in even Bigger Deals, so Gold OA can continue to be treated as annual institutional — preferably national — payments rather than as piecewise payments per individual article.

(9) Lobby governments to mandate, subsidize and prefer Gold OA (preferably hybrid) rather than mandating Green OA

(10) Make sure Green OA is perceived as delayed OA (because of your embargoes!), so that only Gold OA can be immediate.

(11) Mobilize the minority OA advocates who are in a great hurry for re-use rights (CC-BY, text-mining, republication) to support you in your promotion of Gold OA and demotion and embargoing of Green OA.

(12) Cross your fingers and hope that the research community will be gullible enough to buy it all.

There is, however, a compeletely effective prophylactic against this publisher fantasy (but it has to be adopted by the research community, because British and Dutch Ministers are apparently too susceptible to the publishing lobby):

(a) Research funders and institutions worldwide all adopt an immediate-deposit mandate, requiring, as a condition of funding, employment and evaluation, that all researchers deposit their final, peer-reviewed drafts in their institutional repositories immediately upon acceptance for publication, regardless of whether they are published in a subscription journal or a Gold OA journal — and regardless of whether access to the deposit is made Green OA immediately or only after a publisher embargo.

(b) Do not mandate or designate any extra money to pay for Gold OA: let that come from the subscription cancellation savings — if and when Green OA actually releases institutions to cancel subscriptions.

(c) To tide over research access needs during any embargo, make sure to implement the institutional repository’s automated copy-request Button so that any user can request — and any author can provide — a single copy for research purposes with just one click each.


Now please read how fully the Dutch government fell for the publishing lobby’s nocturnal fantasy. (Tomorrow you will see the same from the UK.)

Here is a quick google translation of excerpts from Sander Dekker, Secretary of Education, Culture and Science, Netherlands on “Commitment to further developments in open access scientific publication

Sander Dekker, Secretary of Education, Culture and Science, Netherlands:

“A clear choice in favour of Open Access publications; the transition process provides the necessary speed and shortens the transition period, thus avoiding unnecessary additional costs… .

“The Green road is the form in which the author publishes an article in a journal. In addition, the author deposits a version of the article in Open Access electronic archive ( repository ). There are both discipline-based and university-based repositories. The system of paid subscriptions to journals continues. Publishers often negotiate embargo periods that can range from several months to several years before an article can be made OA through a repository. During the embargo period, only the paid version of the journal accessible. This constitutes a source of revenue for publishers. Moreover, there are publisher restrictions on the version of an article in the repository. Sometimes this may only be the version that has not yet been peer reviewd…

“Netherlands is in a special position because it has a number of major scientific publishers within its borders. That makes dialogue between science and the Dutch publishing possible…

“In the UK, a national committee chaired by Dame Janet Finch laid the foundation for the Open Access policy of the United Kingdom. The report of the Commission Finch serves as a solid standard . It contains a thorough analysis of developments and progress. The Committee notes that due to the major changes it is imperative that all players act together and she advises to achieve by focusing on Open Access journals. Transition Following this advice, the British government earmarked 10 million pounds for Open Access. The initial signs indicate that this has not led to an accelerated transition , but rather a continuation of the transition…

“The transition to the Golden Road: My preference is for Open Access publishing in journals that make their articles accessible free, the Golden road. My aim is to achieve OA within ten years: a full transition to Open Access Golden Road by 2024. to achieve this, at least 60 percent of the scientific publications Open Access should be available in about five years through the Gold OA journals…

“The real change can only be achieved if we work together at the international level with National cooperation and coordination equally important…

“Open Access in the coming years: Dutch universities, KNAW and NWO should give priority to Open Access Golden road…

“While the publishers have not yet made the transition to Open Access Golden road I prefer hybrid Open Access, where the institution pays for publication in a traditional journal…

“For disciplines where the potential for Gold Open Access journals is still limited, it is possible to provide OA via the Green road…

“1. Consultation with likeminded countries: I will get in touch with a number of like-minded countries to promote and acceleration Open Access. I refer primarily to the United Kingdom and Germany . This is because there are a large number of important commercial and academic publishers in the Netherlands and in these two countries i. In addition, Denmark, Finland, Belgium and France are leading like-minded countries…

“2. Create conditions under which open access possible: An important momentum in the transition to Open Access publications when the scientific organizations and major scientific publishers agree on subscriptions to scientific journals . This ‘big deals’ always apply for some years?.”

“3. reports: If the parties concerned are not sufficiently committed , or developments in insufficient progress , the minister and I imagine that the obligation to publish Gold OA to be included in the Law on Higher Education in 2016 Open Access and Research Act (WHW )?.”

Sander Dekker, Secretary of Education, Culture and Science, Netherlands

STM publishers give Green Light for Text-and-Data Mining and we go ahead

Until this week I and other scholars had been generally forbidden to use machines to read the scientific literature and extract facts (“Text and Data Mining”, TDM or “Content-mining”). The STM publishers had prepared a draft licence which can be summarised as 20 different ways in which “the readers’ machines have no rights”. You’ll remember that we were invited to discuss this in Licences for Europe” and we indicated we didn’t want licences, we wanted rights.

So I felt I had to raise this at UKSG on. In my slides I outlined principles:


“The right to read is the right to mine” and noted that “Unrestricted TDM saves lives”

And recommended that we all make some changes:

  • Libraries – reject TDM restrictions
  • Publishers – Damascene conversion J
  • Funders – insist on CC-BY

(A Damascene conversion is a sudden change of heart from the dark side to the light) see Wikipedia:

So I expected some gentle flak for being unrealistic.

But WOW! Just before my talk Vicky Gardner from Taylor and Francis talked about T+F OA and posted a slide which said TDM was allowed for non-commercial purposes. Gulp! So I asked her. Something like:

PMR: Does TF allow me to mine your non-OA content?

VG: Yes

PMR: The subscription material??

VG Yes

PMR: Wow! Christmas has come early [Then gets so excited crashes down step and into people, chairs, audience.]

It turned out the STM publishers had released a statement on Wed (the day before and I’d missed it). It starts

COMMITMENT BY STM PUBLISHERS TO A ROADMAP TO

ENABLE TEXT AND DATA MINING (TDM) FOR NON COMMERCIAL SCIENTIFIC

RESEARCH

IN THE EUROPEAN UNION

 

“Signatories [STM] commit to granting the necessary copyright licenses to permit the text and data mining of copyright protected content and other subject matter on reasonable terms for non-commercial scientific research purposes in the European Union.

 

“the purpose of non-commercial text and data mining of subscribed journal content for non-commercial scientific research, at no additional cost to researchers/subscribing institutions”.

 

The document’s a bit abstract in places, but it’s a political not technical one. The general message is that I and my friends can go ahead and mine content as long as I don’t burn out the publishers’ servers or publish copyright material (e.g. licensed pictures of Mus Michaelis (copyright Disney Corp)).

 

Dear STM publishers I won’t do either of those deliberately and if I make a mistake I’ll rectify it and say sorry.

 

So we’re starting today! Ross and I hacked AMI yesterday to read and emit species from HTML, XML PSF and SVG. We’ll start extracting species next week and publishing them daily or even more frequently.

 

The big day is Wed 27th November – Oxford Open Science run by Jenny Molloy. We are launching our TDM kit for researchers (completely Open). The idea is thate researchers will find it easy to use, saves them time, and they’ll enhance and distribute it. The idea is to get it widespread into research labs where it grows its open culture of mining and sharing the results.

 

I’d be delighted for offers of help. Over the next few posts I’ll detail what TDM for science is and how to get started.

 

 

 

 

 

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see also…
http://www.booktrade.info/index.php/showarticle/50730/

http://www.publishers.org.uk/index.php?option=com_content&view=article&id=2630:the-pa-joins-european-commitment-to-enable-text-and-data-mining&catid=503:pa-press-releases-and-comments&Itemid=1618